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J. Immunol. 162, 5337-5344. NF-κB-inducing kinase is a common mediatorof IL-17, TNF-α, and IL-1-β- induced chemokine promoter activation in intestinal epithelial cells 1999

Awane, M., Andres, P.G., Li, D.J., Reinecker, H-C.

Notes: IEC-6 cells were seeded into 96-well plates and cultured in the presence of various concentrations of human IL-17. Cell proliferation was measured using the CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay. The pGL3 vector was used to clone a PCR-amplified piece of the 5' flanking region of the CINC gene, and the Luciferase Assay System was used to assess promoter activation. All transfections of IEC-6 cells used the pSV-β-galactosidase vector as a control for transfection efficiency. Total RNA for Northern blotting was isolated using the Poly ATtract System. (2510)

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J. Biol. Chem. 274, 17184-17192. Phosphorylation of serine 256 by protein kinase B disrupts transactivation by FKHR and mediates effects of insulin on insulin-like growth factor-binding protein-1 promoter activity through a conserved insulin response sequence. 1999

Guo, S., Rena, G., Cichy, S., He, X., Cohen, P., Unterman, T.

Notes: The pALTER®-MAX Vector was used to create mutations causing three separate amino acid substitutions on the FKHR cDNA. The Reverse Transcriptase System was used for RT-PCR. (1088)

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J. Biol. Chem. 274, 20034-20039. Photocross-linking of an oriented DNA repair complex: Ku bound at a single DNA end. 1999

Yoo, S., Kimzey, A., Dynan, W.S.

Notes: The pGEM®-3Zf(+) Vector was used for routine subcloning and the resulting plasmid was used as a template for PCR. (0114)

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Am. J. Bot. 86, 1168-1181. Phylogeny and evolution of the Betulaceae as inferred from DNA sequences, morphology and paleobotany. 1999

Chen, Z.D., Manchester, S.R., Sun, H.Y.

Notes: PCR products were purified with the Wizard® PCR Preps DNA Purification System and directly sequenced with the SILVER SEQUENCE™ DNA Sequencing System. (1334)

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J. Biol. Chem. 274, 21830–21839. Purification, cDNA cloning, and expression of GDP-L-Fuc:Asn-linked GlcNAc alpha1,3-fucosyltransferase from mung beans. 1999

Leiter, H., Mucha, J., Staudacher, E., Grimm, R., Glössl, J. and Altmann, F.

Notes: Total RNA was isolated from 3-day-old mung bean hypocotyls using the SV Total RNA Isolation System. RT for RT-PCR was performed with the Reverse Transcription System. (0825)

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Science 284, 502–504. Regulation of mammalian circadian behavior by non-rod, non-cone, ocular photoreceptors. 1999

Freedman, M.S., Lucas, R.J., Soni, B., von Schantz, M., Muñoz, M., David-Gray, Z. and Foster, R.

Notes: Total RNA was isolated from 5–10 mouse retinas with the SV Total RNA Isolation System. The isolated RNA was used for Northern analysis and RT-PCR. (1174)

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Science 284, 505–507. Regulation of the mammalian pineal by non-rod, non-cone, ocular photoreceptors. 1999

Lucas, R.J., Freedman, M.S., Muñoz, M., Garcia-Fernández, J.-M. and Foster, R.G.

Notes: Total RNA was isolated from mouse eyes using the SV Total RNA Isolation System. Four to six eyes produced sufficient quantities of RNA for Northern analysis (at least three blots at 5µg per lane) and RT-PCR. (0749)

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J. Invest. Dermatol. 113, 711–719. Regulation of the melanoma cell adhesion molecule gene in melanoma: Modulation of mRNA synthesis by cyclic adenosine monophosphate, phorbol ester, and stem cell factor/c-Kit signaling. 1999

Karlen, S. and Braathen, L.R.

Notes: The SV Total RNA Isolation System was used to extract total RNA from 106 SK-Mel2 human melanoma cells. The isolated RNA was used for RT-PCR with the Access RT-PCR System. The results were used for semi-quantitative analysis. (0959)

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Biochemistry 38, 16246-16252. Sequencing and preliminary characterization of the Na+-translocating NADH: Ubiquinone oxidoreductase from Vibrio harveyi 1999

Zhou, W., Bertsova, Y.V., Feng, B., Tsatsos, P., Verkhovskaya, M.L., Gennis, R.B., Bogachev, A.V., Barquera, B.

Notes: The Wizard® Genomic DNA Purification Kit was used to isolate genomic DNA from Vibrio harveyi. The isolated DNA was used for PCR. (0060)

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Brain Res. 838, 166-170. Single-cell RT-PCR demonstrates expression of voltage-dependent chloride channels (C1C-1, C1C-2 and C1C-3) in outer hair cells of rat cochlea. 1999

Kawasaki, E., Hattori, N., Miyamoto, E., Yamashita, T., Inagaki, C.

Notes: The initial work was performed with a single-tube RT-PCR system from a company in which both the reverse transcriptase and polymerase were mixed together and thus could not be separated. Consequently, the authors could not produce the important no-reverse transcriptase control. To do such a control, the authors used the Access RT-PCR System, which allows such control, since both the Tfl DNA Polymerase and AMV Reverse Transcriptase are added separately to the reaction. (0925)

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J. Biol. Chem. 274, 32145-32152. SPARC regulates the expression of collagen type I and transforming growth factor-beta1 in mesangial cells. 1999

Francki, A., Bradshaw, A.D., Bassuk, J.A., Howe, C.C., Couser, W.G., Sage, E.H.

Notes: The Access RT-PCR System was used for analytical RT-PCR for a variety of targets. Amplification was performed within the linear range of PCR product formation and normalized to the beta-tubulin signal or rpS6 signal. (1169)

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J. Biol. Chem. 274, 19644-19648. Specific DNA recognition by F factor TraY involves beta-sheet residues. 1999

Lum, P.L., Schildbach, J.F.

Notes: Plasmids were purified with either the Wizard® Plus Minipreps DNA Purification System or the Wizard® Plus Midipreps DNA Purifications System. PCR products were purified with the Wizard® PCR Preps System. (0751)

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Genetics 153, 1257-1269. Structural requirements for the tissue-specific and tissue-general functions of the Caenorhabditis elegans epidermal growth factor LIN-3. 1999

Liu, J., Tzou, P., Hill, R.J., Sternberg, P.W.

Notes: Before RT-PCR reactions, the RNA template was treated with RQ1 RNase-free DNase. (0776)

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Am. J. Hum. Genet. 65, 1040-1046. Temperature-Sensitive RB Mutations Linked to Incomplete Penetrance of Familial Retinoblastoma in 12 Families. 1999

Otterson, G.A., Modi, S., Nguyen, K., Coxon, A.B., Kaye, F.J.

Notes: A PCR product amplified from a mutant RB (retinoblastoma protein) cDNA was cloned into the pCI-neo Mammalian Expression Vector. In vivo cyclin-mediated phosphorylation was assayed by cotransfecting the RB expression plasmids with members of the cyclin D or cyclin E family into an RB (-/-) cell line. (0571)

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Am. J. Hum. Genet. 65, 1547–1560. The molecular basis of Sjogren-Larsson syndrome: Mutation analysis of the fatty aldehyde dehydrogenase gene. 1999

Rizzo, W. B., Carney, G. and Lin, Z.

Notes: Genomic DNA was purified from blood or cultured fibroblasts, by means of the Wizard® Genomic DNA Purification Kit. Total RNA was isolated from cultured fibroblasts by use of the SV Total RNA Isolation System, and it was amplified by Access RT-PCR System by use of exonic primers. An expression vector containing an S-tag attached to the 5´ end of the FALDH cDNA was constructed using pCI-neo Mammalian Expression Vector. (0482)

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J. Biol. Chem. 274, 37340-37378. The zinc finger cluster domain of RanBP2 is a specific docking site for the nuclear export factor, exportin-1 1999

Singh, B.B., Patel, H.H., Roepman, R., Schick, D., Ferreira, P.A.

Notes: The PolyATtract® System 1000 was used to isolate poly A+ RNA directly from bovine retinas. The isolated RNA was used for RT-PCR amplification. (0369)

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Infect. Immun. 67, 5012-5020. Transposition of the endogenous insertion sequence element IS1126 modulates gingipain expression in Porphyromonas gingivalis 1999

Simpson, W., Wang, C.-Y., Mikolajczyk-Pawlinska, J., Potempa, J., Travis, J., Bond, V.C., Genco, C.A.

Notes: The RNAgents® Total RNA Isolation System was used to isolated total RNA from Porphyromonas gingivalis cultures. The isolated RNA was used for RT-PCR. The Prime-a-Gene® Labeling System was used to make probes for Southern analysis. (0366)

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Mol. Biol. Cell 9, 89-101. A fungal kinesin required for organelle motility, hyphal growth, and morphogenesis. 1998

Wu, Q., Sandrock, T.M., Turgeon, B.G., Yoder, O.C., Wirsel, S.G., and Aist, J.R.

Notes: Genomic DNA was isolated from Nectria haematococca mycelia with the Wizard® Genomic DNA Purification Kit using a slightly modified protocol.  Mycelia were ground in liquid nitrogen and lyophilized before lysing in a modified lysis buffer consisting of 50mM Tris/HCl, pH 7.5, 50 mM EDTA (pH 8.0), 3% SDS and 1% mercaptoethanol.  The isolated DNA was the template for PCR. (0158)

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Plant Mol. Biol. Rep. 16, 341–349. A high throughput procedure for capturing microsatellites from complex plant genomes. 1998

Connell, J.P., Pammi, S., Iqbal, M.J., Huizinga, T., and Reddy, A.S.

Notes: This paper describes a quick method for analyzing plant microsatellites, also referred to as Simple Sequence Repeats (SSRs), using adaptor-ligated genomic DNA, PCR, and the Streptavidin MagneSphere® Paramagnetic Particles. Briefly, 200μg of Streptavidin MagneSphere® Paramagnetic Particles (pre-equilibrated with 6X SSC) were added to 100ng of a PCR product annealed to a biotinylated-repeat oligo. The captured fragments were washed, size-fractionated and used in PCR with AP-11 primers. (3050)

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Genetics 148, 1081-10. A large pheromone and receptor gene complex determines multiple B mating type specificities in Coprinus cinereus. 1998

O'Shea, S.F., Chaure, P.T., Halsall, J.R., Olesnicky, N.S., Leibbrandt, A., Connerton, I.F , Casselton, L.A.

Notes: cDNAs for the receptor genes were obtained by RT-PCR using the Access RT-PCR System. (0569)

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J. Clin. Invest. 101, 521-526. A missense mutation in hepatocyte nuclear factor-4 α, resulting in a reduced transactivation activity, in human late-onset non-insulin-dependent diabetes mellitus. 1998

Hani, E.H., Suaud, L., Boutin, P., Chèvre, J.-C., Durand, E., Philippi, A., Demanais, F., Vionnet, N., Furuta, H., Velho, G., Bell, G.I., Laine, B., Froguel, P.

Notes: The size of PCR products were determined in relation to the PCR Markers. (1061)

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Products

PCR Markers

Proc. Natl. Acad. Sci. USA 95, 229-234. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria 1998

Roger, A., Svard, S., Tovar, J., Clark, C., Smith, M., Gillin, F. and Sogin, M.

Notes: pGEM®-T Easy Vector Systems (2068)

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Biochemistry 37, 15050-15056. A novel Arg362Ser mutation in the sterol 27-hydroxylase gene (CYP27): Its effects on pre-mRNA splicing and enzyme activity. 1998

Chen, W., Kubota, S., Ujike, H., Ishihara, T., Seyama, Y.

Notes: A minigene was constructed with five exons and four introns from exons 5-9 of the CYP27 gene. The 2111bp product was generated with primers containing a start codon and a stop codon. The product was directly cloned into the pTARGET™ Mammalian expression vector and transfected into COS-1cells. RNA was isolated from these cells and RT-PCR was performed to amplify the spliced product. This assay could distinguish between normal splicing of the third intron and aberrant splicing of due to the Arg362Ser mutation. The proteins produced by the normal and mutant minigenes were also assessed by immunoblotting. (1333)

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Am. J. Hum. Genet. 62, 70-76. A presenilin-1 truncating mutation is present in two cases with autopsy- confirmed early-onset Alzheimer disease. 1998

Tysoe, C., Whittaker, J., Xuereb, J., Cairns, N.J , Cruts, M., Van Broeckhoven, C., Wilcock, G., Rubinsztein, D.C.

Notes: PCR products were purified by Wizard® PCR Preps DNA Purification System and sequenced by use of the fmol® DNA Cycle Sequencing Systems. (0247)

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J. Lipid Res. 39, 509-517. Alternative pre-mRNA splicing of the sterol 27-hydroxylase gene (CYP27) caused by a G to A mutation at the last nucleotide of exon 6 in a patient with cerebrotendinous xanthomatosis 1998

Chen, W., Kubota, S., Seyama, Y.

Notes: To confirm the G to A mutation caused alternative splicing, a minigene containing exon 6 with or without the G to A mutation was amplified. The 2111bp minigene was T/A cloned into the pTargeT™ Mammalian Expression Vector and transfected into COS cells. The RNA was isolated from the transfected cells and analyzed by RT-PCR. The G to A mutation resulted in a truncated RT-PCR product. To confirm the mutation would cause a truncated, inactive protein. A cDNA was constructed that would be the result of the alternative splicing and subcloned into the pTargeT™ Vector. COS cells expressing the mutant had no detectable sterol 27 hydroxylase activity. (1330)

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